INDIVIDUAL MCP TOOL

melting_temperature

Primer/oligo melting temperature: nearest-neighbour (SantaLucia 1998) at the supplied reaction conditions, recommended from 14 nt up, with the Wallace rule for shorter oligos, a fixed-100 mM-Na+ Schildkraut-Lifson reference estimate, and molecular weights.

seqbench.comnone authenticationAvailability not checked

LIVE ENDPOINT

https://seqbench.com/api/mcp

No auth detected

Connect to this endpoint to inspect the live schema for melting_temperature and invoke it with your own arguments.

Indexed input schema

{}

Risk classification

Inferred read-only · medium confidence · heuristic, not a guarantee.

No write-capable action terms were found; this is not proof that invocation has no side effects.

Parent server

seqbench.com

CONNECT WITH APPROVAL

Client installation

Review this server and its permissions before adding it. Secret placeholders must be set locally.

Codex

~/.codex/config.toml

[mcp_servers.seqbench-mcp]
url = "https://seqbench.com/api/mcp"
enabled = true

Claude Code

.mcp.json

{
  "mcpServers": {
    "seqbench-mcp": {
      "type": "http",
      "url": "https://seqbench.com/api/mcp"
    }
  }
}

Claude Desktop

Settings → Connectors → Add custom connector

Name: seqbench-mcp
Remote MCP URL: https://seqbench.com/api/mcp

Add this remote URL as a custom connector in Claude Desktop. Availability depends on the user plan and workspace policy.

Cursor

.cursor/mcp.json

{
  "mcpServers": {
    "seqbench-mcp": {
      "url": "https://seqbench.com/api/mcp"
    }
  }
}

Visual Studio Code

.vscode/mcp.json

Add to Visual Studio Code

{
  "servers": {
    "seqbench-mcp": {
      "type": "http",
      "url": "https://seqbench.com/api/mcp"
    }
  }
}

Generic MCP

Client-specific MCP configuration

{
  "name": "seqbench-mcp",
  "transport": "streamable-http",
  "url": "https://seqbench.com/api/mcp"
}

MCP Inspector

Run the official MCP Inspector locally and enter the indexed Streamable HTTP endpoint.

Related tools

reverse_complement — Reverse, complement and reverse complement of a DNA or RNA sequence.
gc_content — GC content, AT content and per-base composition of a sequence.
translate — Translate a nucleotide sequence to protein (single frame or all six frames; standard code).
find_orfs — Find open reading frames (ATG…stop) across all six frames.
format_sequence — Clean, case-fold, DNA↔RNA convert, reverse and line-wrap a sequence.
motif_finder — Find (overlapping) occurrences of an IUPAC motif on either strand, allowing mismatches.
reverse_translate — Back-translate a protein to DNA (most-frequent codon per organism, or degenerate IUPAC consensus).
random_sequence — Generate a random DNA, RNA or protein sequence, optionally with a target GC content.